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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE313557 Analysis of BMDMs with or without apoptotic cell pretreatment [RNA-seq] April 29, 2026Contributors : Zhixian Liang ; Yiling Zhang ; Siyun Chen ; Zhewen Xiong ; Yalin Tu ; Alfred Sze-Lok ChengSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusImmune-checkpoint blockade (ICB) therapies have transformed the treatment landscapes of solid malignancies, including hepatocellular carcinoma (HCC), which is currently […]
- GSE313402 DEG analysis according to NarQ overexrpession in E. coli W WT, E. coli W NarQXLP deleted strain April 29, 2026Contributors : Seungjin Kim ; Junyeong Sung ; Gyoo-Yeol Jung ; Hyun-Gyu LimSeries Type : Expression profiling by high throughput sequencingOrganism : Escherichia coliIn microbial biochemical production, the intracellular accumulation of target chemicals often reduces growth and productivity. One effective strategy to mitigate this problem is to minimize prod […]
- GSE291032 Effect of myeloid specific Trem2 knockout in hepatocellular carcinoma after anti-PD-1 therapy [RNA-seq] April 29, 2026Contributors : Zhixian Liang ; Yiling Zhang ; Siyun Chen ; Zhewen Xiong ; Yalin Tu ; Alfred Sze-Lok ChengSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusImmune-checkpoint blockade (ICB) therapies have transformed the treatment landscapes of solid malignancies, including hepatocellular carcinoma (HCC), which is currently […]
- GSE329187 SroA links SigS-dependent stress signaling to repression of nitrate respiration in Staphylococcus aureus April 29, 2026Contributors : Shahad Alqahtani ; Sagar Pasham ; Jamilah Alsulami ; Brooke R Tomlinson ; Emily A Felton ; Lindsey N Shaw ; Karl M ThompsonSeries Type : Expression profiling by high throughput sequencingOrganism : Staphylococcus aureusAnalysis of the transcriptome changes in vector control vs. sroA over-expression samples.
- GSE294392 Spatial transcriptome for barley development and germination April 29, 2026Series Type : OtherOrganism : Hordeum vulgareSpatial transcriptome for barley development and germination
- GSE291235 Effect of myeloid specific Trem2 knockout in hepatocellular carcinoma after anti-PD-1 therapy April 29, 2026Series Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThis SuperSeries is composed of the SubSeries listed below.
- GSE329032 DNA:RNA ImmunoPrecipitation (DRIP) sequencing data of virtual memory T cells In vitro induced from WT and Cd4-Cre Rpa1fl/fl CD8+ T cells April 29, 2026Contributors : Wenyu Tian ; Weixuan Wang ; Yaruo Qiu ; Dan LvSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusVirtual memory CD8+ T (TVM) cells are a distinct subset of antigen-inexperienced cells with rapid effector potential, but their regulatory checkpoints remain elusive. Here, using DRIP sequencing, we […]
- GSE295615 Effect of Mettl3 overexpression on gene expression in the livers of mice subjected to chronic-plus-binge ethanol feeding April 29, 2026Contributors : Jinghao Yao ; Pei Liu ; Xinkun Teng ; Dejie Kong ; Hua WangSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusAlcohol-associated steatohepatitis (ASH), a severe form of alcohol-associated liver disease (ALD), is characterized by pronounced steatosis and immune cells infiltration. As an inflammatory disease, […]
- GSE329037 RNA-seq data of virtual memory T cells In vitro induced from WT and DUSP2-/- CD8+ T cells April 29, 2026Contributors : Wenyu Tian ; Weixuan Wang ; Yaruo Qiu ; Dan LvSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusVirtual memory CD8+ T (TVM) cells are a distinct subset of antigen-inexperienced cells with rapid effector potential, but their regulatory checkpoints remain elusive. Here, using bulk RNA sequencing, we found tha […]
- GSE329034 Single-cell transcriptomic analysis of CD8+ T cells from peripheral blood of WT and Dusp2-/- mice April 29, 2026Contributors : Wenyu Tian ; Weixuan Wang ; Yaruo Qiu ; Dan LvSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusVirtual memory CD8+ T (TVM) cells are a distinct subset of antigen-inexperienced cells with rapid effector potential, but their regulatory checkpoints remain elusive. Here, using single-cell transcriptomic profil […]
- GSE329039 Translesional DNA Polη Bypass of LANA-DNA Crosslinks Ensures KSHV Episome Persistence and Tumor Growth April 29, 2026Contributors : Jayaraju Dheekollu ; Coltin J Albitz ; Anjali Pathania ; Frederick Keeney ; Samantha S Soldan ; Paul M LiebermanSeries Type : OtherOrganism : Homo sapiens ; Human gammaherpesvirus 8The episome maintenance of DNA tumor viruses depend on their viral-encoded sequence-specific DNA binding proteins. We show here that the Kaposi’s Sarcoma- Associate […]
- GSE329041 DNA:RNA ImmunoPrecipitation (DRIP) sequencing data of virtual memory T cells In vitro induced from WT and Dusp2-/- CD8+ T cells April 29, 2026Contributors : Wenyu Tian ; Weixuan Wang ; Yaruo Qiu ; Dan LvSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusVirtual memory CD8+ T (TVM) cells are a distinct subset of antigen-inexperienced cells with rapid effector potential, but their regulatory checkpoints remain elusive. Here, using DRIP sequencing, we […]
- GSE329173 Integrating Single-Cell and Macroscopic Transcriptomics to Decode Transcriptional and Immune Microenvironment Remodeling Associated with Extravillous Trophoblast Invasion Arrest in Severe Preeclampsia April 29, 2026Contributors : Qihang Zhao ; Xiao Lin ; Juanmei Gao ; Linzhen WuSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensPreeclampsia is a pregnancy-specific systemic disorder that poses significant threats to maternal and perinatal health. The core pathological features of this condition involve shallow invasion of extravillous […]
- GSE311573 Disordered protein LAT encodes relative levels of signaling pathways in T cell activation April 29, 2026Series Type : Expression profiling by high throughput sequencing ; Other ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Homo sapiensThis SuperSeries is composed of the SubSeries listed below.
- GSE328830 Temporal control of sgRNA library activation unlocks large-scale in vivo CRISPR screens April 29, 2026Contributors : Silvia Fenoglio ; Yi Yu ; James Tepper ; Lauren Grove ; Alborz Bejnood ; Samuel R Meier ; Ashley H Choi ; Hsin-Jung Wu ; Annabel Devault ; Shangtao Liu ; Binzhang Shen ; Tenzing Khendu ; Hannah Stowe ; Esther C Uijttewaal ; Minjie Zhang ; Brian B Haines ; Erik Wilker ; Alan Huang ; Daniel Schramek ; Ulrich Elling ; Xuewen Pan ; Jannik N Anders […]