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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE190151 RNAseq in tail fins of turquoise killifish November 9, 2025Contributors : David Willemsen ; Jongbeom Park ; Dario R ValenzanoSeries Type : Expression profiling by high throughput sequencingOrganism : Nothobranchius furzeriIn this study we investigated gene expression in tail fins of 12 samples. 3 samples from adult red-tailed male fish (MZCS002), 3 samples from adult yellow-tailed male fish (GRZ-BELL) and 3 samples […]
- GSE275670 Characterizing Hypoxia-Orchestrated Post-Stroke Changes in Oligodendrocyte Precursor Cells for Improved Stroke Cell Therapy November 9, 2025Contributors : Ken Yasuda ; Takakuni Maki ; Kazuto Tsukita ; Yasuhiro KuwataSeries Type : Expression profiling by high throughput sequencingOrganism : Rattus norvegicusOligodendrocyte precursor cells (OPCs) are traditionally known for their role in differentiating into oligodendrocytes, thereby contributing to myelination. Additionally, it has been increasin […]
- GSE246179 Single cell analysis of epidermis from nickel-challenged skin November 9, 2025Contributor : Kelvin YeungSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensIn this study, we investigated the consequences of repetitive nickel challenge at previously nickel-challenged skin sites in allergic participants. Repeated challenge with nickel resulted in progressive worsening allergic skin reactions in nearly […]
- GSE295121 VGLL1 contributes to both the transcriptome and epigenome of the developing trophoblast compartment [ATAC-Seq] November 9, 2025Contributors : Ruben I Calderon ; Nirvay Sah ; Molly Huang ; Ryan H Kittle ; Walee B Shaik ; Jennifer N Chousal ; Sampada Kallol ; Tony Bui ; Robert Morey ; Alexandra Mitre ; Norah M Fogarty ; Claudia Gerri ; Claire Zheng ; Peter DeHoff ; Pratik Home ; Kathy K Niakan ; Heidi Cook-Andersen ; Kathleen M Fisch ; Soumen Paul ; Francesca SoncinSeries Type : Genom […]
- GSE280244 Licochalcone B alleviates Crohn’s Disease injury by targeting FTO November 9, 2025Contributors : Duo Ma ; Xinhua Liu ; Yaling Hong ; Xingxing ZhangSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusTo investigate the mechanism of demethylase FTO in Crohn's disease，We used RNA-seq data from three normal colon samples and three TNBS-induced IBD colon samples of C57 mice for gene expression profiling. […]
- GSE295124 VGLL1 contributes to both the transcriptome and epigenome of the developing trophoblast compartment [ChIP-Seq] November 9, 2025Contributors : Ruben I Calderon ; Nirvay Sah ; Molly Huang ; Ryan H Kittle ; Walee B Shaik ; Jennifer N Chousal ; Sampada Kallol ; Tony Bui ; Robert Morey ; Alexandra Mitre ; Norah M Fogarty ; Claudia Gerri ; Claire Zheng ; Peter DeHoff ; Pratik Home ; Kathy K Niakan ; Heidi Cook-Andersen ; Kathleen M Fisch ; Soumen Paul ; Francesca SoncinSeries Type : Genom […]
- GSE295122 VGLL1 contributes to both the transcriptome and epigenome of the developing trophoblast compartment [RNA-Seq 2] November 9, 2025Contributors : Ruben I Calderon ; Nirvay Sah ; Molly Huang ; Ryan H Kittle ; Walee B Shaik ; Jennifer N Chousal ; Sampada Kallol ; Tony Bui ; Robert Morey ; Alexandra Mitre ; Norah M Fogarty ; Claudia Gerri ; Claire Zheng ; Peter DeHoff ; Pratik Home ; Kathy K Niakan ; Heidi Cook-Andersen ; Kathleen M Fisch ; Soumen Paul ; Francesca SoncinSeries Type : Expre […]
- GSE295126 VGLL1 contributes to both the transcriptome and epigenome of the developing trophoblast compartment [RNA-Seq] November 9, 2025Contributors : Ruben I Calderon ; Nirvay Sah ; Molly Huang ; Ryan H Kittle ; Walee B Shaik ; Jennifer N Chousal ; Sampada Kallol ; Tony Bui ; Robert Morey ; Alexandra Mitre ; Norah M Fogarty ; Claudia Gerri ; Claire Zheng ; Peter DeHoff ; Pratik Home ; Kathy K Niakan ; Heidi Cook-Andersen ; Kathleen M Fisch ; Soumen Paul ; Francesca SoncinSeries Type : Expre […]
- GSE300412 SOX2 is a dispensable modulator of NUT carcinoma oncogenesis in mouse November 9, 2025Contributors : Bin Gu ; Chenxiang LuoSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusNUT Carcinoma (NC) is an aggressive and lethal malignancy driven by BRD4::NUTM1 and other NUTM1 fusion oncogenes, which aberrantly activate transcription factors (TFs) linked to poorly differentiated squamous cell carcinoma (SCC) phenot […]
- GSE308443 Alternative Splicing And Global Transcriptome Changes Associated with LPS Stimulation in Human Peripheral Blood Mononuclear Cells November 9, 2025Contributors : Kord Kober ; Esther Chavez Iglesias ; Anatol SucherSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensLipopolysaccharide (LPS) is a commonly used stimulant that induces an innate immune response, and serves as a model for studying inflammatory responses. Alternative splicing is key to gene expression and cel […]
- GSE308968 Comparative Single-Cell Transcriptomics of Immune Profiles in LADA Versus Type 1 Diabetes November 9, 2025Contributor : Vadim ChechekhinSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensAutoimmune diabetes encompasses rapidly progressive type 1 diabetes mellitus (T1D) and indolent latent autoimmune diabetes in adults (LADA), yet the immunological drivers of this kinetic divergence remain unresolved. We performed single-cell R […]
- GSE309271 N1-Methylpseudouridine Directly Modulates Translation Dynamics November 9, 2025Contributors : Batsheva Rozman ; Karin Broennimann ; Aharon Nachshon ; Tamar Arazi ; Noam Stern-GinossarSeries Type : Expression profiling by high throughput sequencing ; OtherOrganism : Homo sapiensThe remarkable effectiveness of mRNA vaccines against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has highlighted synthetic mRNA as a promising […]