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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE284806 total RNA-seq from HCT116 (ENCSR034DEZ) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensHCT116-SUPT16H-clone1-untreated-new_bulk-F1For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE223268 Eosinophils Restrain Humoral Alloimmunity after Lung Transplantation [scRNA-seq] January 14, 2025Contributors : Luke Tallon ; Jean-Paul Courneya ; Alexander Krupnick ; Zhongcheng MeiSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusWhile the function of many leukocytes in transplant biology has been well defined, the role of eosinophils is controversial and remains poorly explored. Conflicting data exist regarding eo […]
- GSE284881 eCLIP from K562 (ENCSR497XZI) January 14, 2025Series Type : OtherOrganism : Homo sapienseCLIP experiment on K562 against MBNL1For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE284847 total RNA-seq from neutrophil (ENCSR698PIS) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Mus musculusMouseF1 of C57BL/6 (f) x CAST Eij (m)_m.neutrophil_spleen_M_65daysFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE284952 total RNA-seq from psoas muscle (ENCSR870IUI) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensW62 psoas muscleFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE284914 Control eCLIP from K562 (ENCSR327BBW) January 14, 2025Series Type : OtherOrganism : Homo sapienseCLIP control experiment on K562 against ELAVL1For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE286864 snRNA-seq from heart left ventricle (ENCSR994VEG) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE285987 Targeting the 3D genome by anthracyclines for chemotherapeutic effects January 14, 2025Contributors : Minkang Tan ; Shengnan Sun ; Andrea Perreault ; Douglas H Phanstiel ; Baoxu PangSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Homo sapiensThe chromatins are folded into three-dimensional (3D) structures, and aberrant chromatin 3D folding has been shown in cancer. We performed ATAC-seq and TOP2A ChIP-s […]
- GSE286866 snATAC-seq from forebrain (ENCSR997YJI) January 14, 2025Series Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculussnATAC-seq of mouse forebrainFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE286865 snRNA-seq from layer of hippocampus (ENCSR995ZKH) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Mus musculusFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE286867 snATAC-seq from transverse colon (ENCSR997YNO) January 14, 2025Series Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Homo sapienssnATAC-seq of human colon transverseFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE286872 dsDAP: an efficient method for high-abundance DNA-encoded library construction in mammalian cells January 14, 2025Contributor : Shuai LiSeries Type : OtherOrganism : Homo sapiensDNA-encoded libraries are invaluable tools for high-throughput screening and functional genomics studies. However, constructing high-abundance libraries in mammalian cells remains challenging. Here, we present dsDNA-assembly-PCR (dsDAP), a novel Gibson-assembly-PCR strategy for creating DNA-enco […]
- GSE286932 The effect of different concentrations of ruminal VFAs on the circadian rhythm of gene expression in ovine ruminal epithelial cells using RNA-seq January 14, 2025Contributor : Yongkang ZhenSeries Type : Expression profiling by high throughput sequencingOrganism : Ovis ariesThis experiment aimed to investigate the effect of different concentrations of ruminal VFAs on the circadian rhythm of gene expression in ORECs of Grain-diet and Hay-diet groups. The ORECs treated with Grain-VFAs and Hay-VFAs were collected at six […]
- GSE286598 snRNA-seq from heart left ventricle (ENCSR056QLB) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
- GSE286863 snRNA-seq from heart left ventricle (ENCSR991LHO) January 14, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensFor data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf