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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE262157 Comparative analysis of mouse strains for in vivo reprogramming May 4, 2025Series Type : Expression profiling by high throughput sequencingOrganism : Mus musculusIn vivo reprogramming through the forced expression of Oct4, Sox2, Klf4, and c-Myc (OSKM) has demonstrated great potential for reversing age-associated phenotypes, as the combination of these transcription factors actively promote cell regeneration and rejuvenation in vari […]
- GSE230680 RNA-Seq from SCs after exercise May 4, 2025Contributors : Huating Wang ; Suyang Zhang ; Yile Huang ; Feng Yang ; Yingzhe DingSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusRNA seq of Freshly isolated satellite cells from wild type mice after volunteer exercise (VE), endurance exercise (EE) and non-exercise Ctrl (NE)
- GSE266366 Epigenomic profiling of active regulatory elements by enrichment of unmodified CpG dinucleotides May 4, 2025Contributors : Luca Tosti ; Calum Mould ; Imogen Gatehouse ; Anyela Camargo ; Anthony Smith ; Krystian Ubych ; Jack Kennefick ; Peter W Laird ; Robert K NeelySeries Type : Methylation profiling by high throughput sequencingOrganism : Homo sapiensIn this study we present an enrichment-based and bisulfite-free approach for epigenomic profiling named ‘Active-Se […]
- GSE266156 Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations May 4, 2025Contributors : Lirong Zhao ; Yunwei Liu ; Houping Wang ; Diqiu YuSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Oryza sativaTo identify direct targets of OsWRKY11, we performed DNA affinity purification sequencing (DAP-seq).
- GSE268454 Insights into Human Melanocyte Development and Characteristics through Pluripotent Stem Cells Combined with Single-Cell Sequencing May 4, 2025Contributors : Jie Yang ; Zihan Wang ; Hang Zhou ; Yuyun Xiong ; Yumei Li ; Yunwen Zheng ; Liping LiuSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensMany human pigment-related diseases are closely linked to melanocytes. However, our understanding of human melanocyte development has primarily relied on studies conducted […]
- GSE267218 Genomic effects of an EP4-receptor agonist in airway epithelia May 4, 2025Contributors : Radhika Joshi ; Mark GiembyczSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensIt has been proposed that inhaled EP4-receptor agonists could represent an alternative class of bronchodilators for the treatment of asthma that are as effective as β2-adrenoceptor agonists. However, the genomic impact of such dr […]
- GSE288689 Chromatin interaction maps of human arterioles reveal new mechanisms for the genetic regulation of blood pressure [Micro_C] May 4, 2025Contributors : Yong Liu ; Rajan Pandey ; Qiongzi Qiu ; Pengyuan Liu ; Hong Xue ; Jingli Wang ; Bhavika Therani ; Rong Ying ; Kristie Usa ; Michael Grzybowski ; Chun Yang ; Manoj K Mishra ; Andrew S Greene ; Allen W Cowley Jr ; Sridhar Rao ; Aron M Geurts ; Michael E Widlansky ; Mingyu LiangSeries Type : OtherOrganism : Homo sapiensArterioles are small blood […]
- GSE290383 Induced loss of TREX1 in host cells inflames the tumor micromilieu and invigorates CTL-mediated cancer control May 4, 2025Contributors : Emilija Marinkovic ; Minyi Chen ; Nadja Schubert ; Elif Dogan Dar ; Tanja Poth ; Janet Y Leung ; Jack Lohre ; Jennifer M Sahni ; Christine Tun ; Pavithra Rajeswaran ; Tanja Mehlo-Jensen ; Olivia Perng ; Mark C Hill ; Pallavur Sivakumar ; Michael Barnes ; Rohit Malik ; Rayk Behrendt ; Axel RoersSeries Type : Expression profiling by high through […]
- GSE288692 Chromatin interaction maps of human arterioles reveal new mechanisms for the genetic regulation of blood pressure [RNA-seq] May 4, 2025Contributors : Yong Liu ; Rajan Pandey ; Qiongzi Qiu ; Pengyuan Liu ; Hong Xue ; Jingli Wang ; Bhavika Therani ; Rong Ying ; Kristie Usa ; Michael Grzybowski ; Chun Yang ; Manoj K Mishra ; Andrew S Greene ; Allen W Cowley Jr ; Sridhar Rao ; Aron M Geurts ; Michael E Widlansky ; Mingyu LiangSeries Type : Expression profiling by high throughput sequencingOrgan […]
- GSE288690 Chromatin interaction maps of human arterioles reveal new mechanisms for the genetic regulation of blood pressure [pan_promoter_Micro-C] May 4, 2025Contributors : Yong Liu ; Rajan Pandey ; Qiongzi Qiu ; Pengyuan Liu ; Hong Xue ; Jingli Wang ; Bhavika Therani ; Rong Ying ; Kristie Usa ; Michael Grzybowski ; Chun Yang ; Manoj K Mishra ; Andrew S Greene ; Allen W Cowley Jr ; Sridhar Rao ; Aron M Geurts ; Michael E Widlansky ; Mingyu LiangSeries Type : OtherOrganism : Homo sapiensArterioles are small blood […]
- GSE288693 Chromatin interaction maps of human arterioles reveal new mechanisms for the genetic regulation of blood pressure [RRBS] May 4, 2025Contributors : Yong Liu ; Rajan Pandey ; Qiongzi Qiu ; Pengyuan Liu ; Hong Xue ; Jingli Wang ; Bhavika Therani ; Rong Ying ; Kristie Usa ; Michael Grzybowski ; Chun Yang ; Manoj K Mishra ; Andrew S Greene ; Allen W Cowley Jr ; Sridhar Rao ; Aron M Geurts ; Michael E Widlansky ; Mingyu LiangSeries Type : Methylation profiling by high throughput sequencingOrga […]
- GSE288694 Chromatin interaction maps of human arterioles reveal new mechanisms for the genetic regulation of blood pressure [snRNA-seq] May 4, 2025Contributors : Yong Liu ; Rajan Pandey ; Qiongzi Qiu ; Pengyuan Liu ; Hong Xue ; Jingli Wang ; Bhavika Therani ; Rong Ying ; Kristie Usa ; Michael Grzybowski ; Chun Yang ; Manoj K Mishra ; Andrew S Greene ; Allen W Cowley Jr ; Sridhar Rao ; Aron M Geurts ; Michael E Widlansky ; Mingyu LiangSeries Type : Expression profiling by high throughput sequencingOrgan […]
- GSE289514 Conditional Overexpression of Serpine2 Promotes Hair Cell Regeneration from Lgr5+ Progenitors in the Neonatal Mouse Cochlea May 4, 2025Contributors : Hairong Xiao ; Jiheng Wu ; Lixuan Huang ; Ying Ma ; Leilei Wu ; Yanqin Lin ; Zixuan Ye ; Xin Tan ; Xujun Tang ; Wei Tong ; Mingchen Dai ; Yintao Wang ; Xia Sheng ; Renjie Chai ; Shasha ZhangSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusNeonatal cochlear Lgr5+ progenitors can regenerate hair cells (HCs), […]
- GSE202216 Rhinovirus-induced gene expression patterns that distinguish between neutrophilic asthma and other asthma inflammatory phenotypes in human peripheral blood mononuclear cells May 4, 2025Contributors : Yang Xi ; Valentine Murigneux ; Jodie L Simpson ; Chris Grainge ; Melanie L Carroll ; John W UphamSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensObjective: The aim of the current study was to use circulating immune cells to define gene expression patterns that best distinguish between different asthma ph […]
- GSE268792 Induced loss of TREX1 in host cells inflames the tumor micromilieu and invigorates CTL-mediated cancer control May 4, 2025Contributors : Emilija Marinkovic ; Minyi Chen ; Nadja Schubert ; Elif Dogan Dar ; Tanja Poth ; Janet Y Leung ; Jack Lohre ; Jennifer M Sahni ; Christine Tun ; Pavithra Rajeswaran ; Tanja Mehlo-Jensen ; Olivia Perng ; Mark C Hill ; Pallavur Sivakumar ; Michael Barnes ; Rohit Malik ; Rayk Behrendt ; Axel RoersSeries Type : Expression profiling by high through […]