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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE269386 Oxidative and glycolytic skeletal muscle-derived exosomes selectively coated miRNAs and participate in regulating myoblast proliferation and differentiation mediated by miR-4331-3p June 7, 2026Contributors : Jia Luo ; Daiyu Zhang ; Zhenhao Wen ; Qiang Pu ; Taorun Luo ; Xiaoqian Wu ; Jie Chai ; Li Chen ; Changfeng Yang ; Yongfu HuangSeries Type : Non-coding RNA profiling by high throughput sequencingOrganism : Sus scrofaThe phenotypic characteristics and meat quality of skeletal muscle are collectively determined by the muscle cells, other cellular […]
- GSE259269 Identification of the SARS-CoV-2 genome packaging signal in the nsp12-coding region June 7, 2026Contributors : Youngran Park ; Jongmin Lim ; V Narry Kim ; Young-suk LeeSeries Type : OtherOrganism : Chlorocebus aethiopsSelective genome packaging is a critical step for RNA viruses, which must distinguish genomic RNA from other abundant transcripts. For SARS-CoV-2, the cis-acting packaging signal is thought to be recognized by the nucleocapsid (N) protein […]
- GSE299273 Relationship between environmental pollutant TBOEP and renal metabolism June 7, 2026Series Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensTris(2-butoxyethyl) phosphate (TBOEP) is a common organophosphorus compound widely used in industrial production as a plasticizer and flame retardant. In recent years, studies have shown that TBOEP may pose potential threats to human health, particularly its association wi […]
- GSE288137 Single cell multiomics unravel the transcription networks controlling the different EMT tumor states June 7, 2026Contributors : Andrea Pérez González ; Gabriel Solvi Windels ; Kevin Bévant ; Justine Lengrand ; Sophie Lemaire ; Virginie Moers ; Samuel Scozzaro ; Ulysse Debroux ; Christine Dubois ; Sebastiaan Vanuytven ; Cédric BlanpainSeries Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrgani […]
- GSE316842 Transcriptomic Profiling of Blood-Stage Plasmodium falciparum in Children with Severe Malarial Anemia June 7, 2026Contributors : Douglas J Perkins ; Qiuying Cheng ; Ivy Hurwitz ; Christophe G Lambert ; Philip D Seidenberg ; Kristan A Schneider ; Benjamin H McMahon ; Collins Ouma ; Evans Raballah ; Samuel B Anyona ; Clinton O Onyango ; Anne A Ong'ondo ; Nicholas O Ondiek ; Everlyne Modi ; Joan A Ochieng ; Vincent I Omanje ; Rodney B Mongare ; Sharley A Wasena ; Sham […]
- GSE299535 Gene expression analysis of early Barrett's adenocarcinoma, Barrett's esophagus, normal gastric mucosa, and esophageal mucosa June 7, 2026Contributors : Dai Kubota ; Yu TakahashiSeries Type : Expression profiling by arrayOrganism : Homo sapiensThe objective of this study was to identify genes and pathways early Barrett's adenocarcinoma through comprehensive gene expression analysis.
- GSE333968 Vitamin B6 Promotes Endoderm Differentiation of Mouse Embryonic Stem Cells via Glycolysis-H3K18 Lactylation Axis June 7, 2026Contributor : Dengwang ChenSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusVitamin B6 (pyridoxine) is widely used as a first-line treatment for nausea and vomiting during pregnancy, yet its safety profile during embryonic development, particularly at supraphysiological doses, remains incompletely understood.
- GSE334479 Whole-genome bisulfite sequencing reveals dynamic DNA methylation changes in Vigna radiata under direct and pre-conditioned salt stress June 7, 2026Series Type : Methylation profiling by high throughput sequencingOrganism : Vigna radiataDNA methylation is an important epigenetic mechanism regulating gene expression and stress memory in plants. To investigate the role of DNA methylation in salt stress adaptation, we performed whole-genome bisulfite sequencing (WGBS) of mung bean (Vigna radiata cv. Weilv […]
- GSE334034 Targeting mitochondrial ROS-CK2-SET-PP2A pathway with ceria nanoparticles to reverse Tau pathology in APOEε4-associated Alzheimer’s disease [RNA-seq] June 7, 2026Contributors : Jong Won Han ; Yubeen Kim ; June-Hyun Jeong ; Yunjung Lee ; Dakyung Lee ; Suk-Kyung Shin ; Seok Beom Hong ; Keuntae Kim ; Sieun Choi ; Rian Kang ; Jong-Chan Park ; Kangmin Suh ; Jinyoung Chu ; Nohyun Lee ; Sang Ihn Han ; Dong-Sup Lee ; Il-Joo Cho ; Seok Chung ; Jong-Il Kim ; Taeghwan Hyeon ; Inhee Mook-JungSeries Type : Expression profiling by […]
- GSE334026 CUT&Tag of H3K18 lactylation in mouse embryonic stem cells treated with vitamin B6 for 7 days June 7, 2026Contributor : Dengwang ChenSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusVitamin B6 (pyridoxine) is widely used as a first-line treatment for nausea and vomiting during pregnancy, yet its safety profile during embryonic development, particularly at supraphysiological doses, remains incompletely understoo […]
- GSE334035 Targeting mitochondrial ROS-CK2-SET-PP2A pathway with ceria nanoparticles to reverse Tau pathology in APOEε4-associated Alzheimer’s disease [scRNA-seq] June 7, 2026Contributors : Jong Won Han ; Yubeen Kim ; June-Hyun Jeong ; Yunjung Lee ; Dakyung Lee ; Suk-Kyung Shin ; Seok Beom Hong ; Keuntae Kim ; Sieun Choi ; Rian Kang ; Jong-Chan Park ; Kangmin Suh ; Jinyoung Chu ; Nohyun Lee ; Sang Ihn Han ; Dong-Sup Lee ; Il-Joo Cho ; Seok Chung ; Jong-Il Kim ; Taeghwan Hyeon ; Inhee Mook-JungSeries Type : Expression profiling by […]
- GSE334477 Transcriptome analysis of Vigna radiata leaves in response to direct and pre-conditioned salt stress [RNA-Seq] June 7, 2026Series Type : Expression profiling by high throughput sequencingOrganism : Vigna radiataWe investigated the adaptive responses of mung bean cultivar 'Weilv 9' to salt stress using RNA-seq. Two treatments were applied: T1 (pre-conditioned with 100 mM NaCl for 24 h, recovered for 48 h, then re-exposed to 100 mM NaCl) and T2 (direct exposure to 100 mM […]
- GSE334478 ATAC-seq profiling of chromatin accessibility in Vigna radiata leaves under direct and pre‑conditioned salt stress June 7, 2026Series Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Vigna radiataSalinity is a major environmental constraint limiting crop productivity. Chromatin accessibility plays a crucial role in transcriptional regulation under stress conditions. In this study, we investigated genome-wide chromatin accessibility dynamics in mung b […]
- GSE255645 RNA-sequencing results of the human thyroid papillary carcinoma cell TPC-1 with overexpression of the PTCSC3-AS1 gene June 7, 2026Contributors : Yanqiang Wang ; Yutong ZhangSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensHere we report gene expression profiles of TPC-1 cells treated with PTCSC3-AS1 overexpressed vector (OE) or empty vector (EV). PTCSC3-AS1 gene was cloned from expressed sequence tag (AA632637). And the sequence of PTCSC3-AS1 is in […]
- GSE330574 Transcriptional changes in Drosophila tbph mutants and inducible neuronal TBPH rescue in adult heads at 60 hours post-eclosion June 7, 2026Contributors : Feiguin Fabian ; Romano GiuliaSeries Type : Expression profiling by arrayOrganism : Drosophila melanogasterTBPH, the Drosophila ortholog of human TDP-43, is required for normal neuronal function. To identify transcriptional programs altered by loss of TBPH and those restored by neuronal re-expression of TBPH, we performed Affymetrix microarray […]