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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE240093 A PHOT2-NPH3-CAMTA2 light-temperature coincidence detection system in Arabidopsis I July 4, 2025Contributors : Adam Seluzicki ; Joanne ChorySeries Type : Expression profiling by high throughput sequencingOrganism : Arabidopsis thalianaLight and temperature variations are inescapable in nature, providing many types of information and influencing development and physiology. PHOTOTROPIN (PHOT) blue light receptor-kinases play well-characterized roles in m […]
- GSE301043 Single cell RNA sequencing of Human Fetal Liver and Thymus samples July 4, 2025Contributors : Jing Yao Leong ; Pavanish Kumar ; Sharifah Nur HazirahSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensSingle cell RNA TCR sequencing data reveal antigenic selection in T effector cells in peripheral liver tissue samples
- GSE274515 Effect of chronic social defeat stress (CSDS) on gene expression in wild-type mice and in Neurensin-2 knockout mice. July 4, 2025Contributor : Gali UmschweifSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusCSDS is a robust model of depression with a detective behavioral effect. In prior studies, we established that the deletion of Neurensin-2, a vesicular protein, confers resilience in this model. The distinctive behavioral effect of CSDS stems fr […]
- GSE240124 Genetic architecture of a light-temperature coincidence detector July 4, 2025Contributors : Adam Seluzicki ; Joanne ChorySeries Type : Expression profiling by high throughput sequencingOrganism : Arabidopsis thalianaThis SuperSeries is composed of the SubSeries listed below.
- GSE283110 ChIP-seq of histone modifications in Arabidopsis thaliana Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5 using H2AZ, H3, H3K4me3 and H3K27me3 antibodies as well as input DNA control July 4, 2025Contributors : Fan Wang ; Linghao Zhang ; Wenhao Xie ; Xixi Cai ; Jiachen Wang ; Xiaolong Wu ; Youchao Wang ; Aiwu Dong ; Wei SuSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Arabidopsis thalianaTo investigate the distribution patterns of histone modifications across the genome in different mutants, we analyzed the d […]
- GSE281317 single-cell multiomics data for the developing human pelvic girdle [spatial] July 4, 2025Contributor : G SenevirathneSeries Type : OtherOrganism : Homo sapiensHuman pelvic girdle, especially the ilium is considered an evolutionary novelty. To understand the genetic architecute behind the formation of this structure, we conducted single cell multiomics across developmental stages.
- GSE295443 Identification of Neuritin 1 as a local metabolic regulator of brown adipose tissue July 4, 2025Contributors : Manuela Sánchez-Feutrie ; Antonio Zorzano ; Vanessa Hernández ; Óscar ReinaSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusBrown adipose tissue (BAT) plays a key role in metabolic homeostasis through its thermogenic effects and the secretion of regulatory molecules. Here we report that RAP250 haploinsuffi […]
- GSE284033 Coupled CRISPR Scanning with Targeted Chromatin Accessibility Profiling Enabled by a Double-Stranded DNA Deaminase [Nanopore] July 4, 2025Contributors : Heejin Roh ; Simon Shen ; Yan Hu ; Hui Si KwokSeries Type : OtherOrganism : Homo sapiensGenome editing enables sequence-function profiling of endogenous cis-regulatory elements, driving understanding of their mechanisms and the development of gene therapies. However, these approaches lack direct, scalable readouts of chromatin accessibility ac […]
- GSE296590 Poly(A)-RNA-Seq sequencing of Aspergillus fumigatus strain CEA10 at 37°C and 42°C July 4, 2025Contributors : Matthew G Blango ; Lukas SchrettenbrunnerSeries Type : Expression profiling by high throughput sequencingOrganism : Aspergillus fumigatusExperimantal validation for the 5' and 3' ends of poly(A)-RNA in Aspergillus fumigatus is currently lacking. The dataset here was used a total RNA-Seq control for poly(A)-enriched RNAs of Aspergillu […]
- GSE295553 Hepatic leukemia factor directs tissue residency of proinflammatory CD4+ T cells [bulk] July 4, 2025Contributors : Masahiro Kiuchi ; Masahiro Nemoto ; Hiroyuki Yagyu ; Ami Aoki ; Chiaki Iwamura ; Hikaru Sugimoto ; Yuki Masuo ; Hajime Morita ; Shuhe Ma ; Yukiko Okuno ; Takahisa Hishiya ; Kaori Tsuji ; Atsushi Sasaki ; Kota Kokubo ; Kanae Ohishi ; Rie Shinmi ; Yuri Sonobe ; Tomohisa Iinuma ; Syuji Yonekura ; Tomomasa Yokomizo ; Norio Komatsu ; Atsushi Onoder […]
- GSE296591 5' poly(A)-RNA-End sequencing of Aspergillus fumigatus strain CEA10 July 4, 2025Contributors : Matthew G Blango ; Lukas SchrettenbrunnerSeries Type : OtherOrganism : Aspergillus fumigatusExperimantal validation for the 5' end of poly(A)-RNA in Aspergillus fumigatus is currently lacking. Therefore we performed 5'RNA-End sequencing from 24-h mycelium grown in AMM at 37°C and 42°C with a library prepration kit purchased from Ecli […]
- GSE296592 3' poly(A)-RNA-End sequencing of Aspergillus fumigatus strain CEA10 July 4, 2025Contributors : Matthew G Blango ; Lukas SchrettenbrunnerSeries Type : OtherOrganism : Aspergillus fumigatusExperimantal validation for the 3' end of poly(A)-RNA in Aspergillus fumigatus is currently lacking. Therefore we performed 3'RNA-End sequencing from 24-h mycelium grown in AMM at 37°C and 42°C with a library kit purchased from Eclipse Bioinno […]
- GSE296593 RNA-Seq sequencing of Aspergillus fumigatus strain CEA10 at 37°C and 42°C July 4, 2025Series Type : Expression profiling by high throughput sequencing ; OtherOrganism : Aspergillus fumigatusThis SuperSeries is composed of the SubSeries listed below.
- GSE292282 H3K79 methylation and H3K36 trimethylation synergistically regulate gene expression in pluripotent stem cells [RNA-Seq] July 4, 2025Contributor : Kaixiang CaoSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusIn metazoans, nucleosomes harboring H3K79 methylation (H3K79me) deposited by the histone methyltransferase DOT1L decorate actively transcribed genes. Although DOT1L is implicated in transcription regulation and pathogenesis of human diseases such […]
- GSE295442 Identification of Neuritin 1 as a local metabolic regulator of brown adipose tissue. July 4, 2025Contributors : Manuela Sánchez-Feutrie ; Montserrat Romero ; Antonio Zorzano ; Vanessa Hernández ; Óscar ReinaSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusBrown adipose tissue (BAT) plays a key role in metabolic homeostasis through its thermogenic effects and the secretion of regulatory molecules. Here we report that […]