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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE210344 The 3D architecture of the genome determines specificity of HNF1β-mediated gene regulation (ChIP-Seq) August 2, 2026Contributors : Lotte Tholen ; Eveline Kahlman ; Peter Krijger ; Branco Heuts ; Amin Allahyar ; Joost Martens ; Wouter de Laat ; Joost Hoenderop ; Jeroen de BaaijSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusCell-type specific gene expression patterns are essential for kidney function. This is governed by […]
- GSE210343 The 3D architecture of the genome determines specificity of HNF1β-mediated gene regulation (ATAC-Seq) August 2, 2026Contributors : Lotte Tholen ; Eveline Kahlman ; Peter Krijger ; Branco Heuts ; Amin Allahyar ; Joost Martens ; Wouter de Laat ; Joost Hoenderop ; Jeroen de BaaijSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusCell-type specific gene expression patterns are essential for kidney function. This is governed by […]
- GSE210346 The 3D architecture of gene regulation in the distal convoluted tubule August 2, 2026Series Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThis SuperSeries is composed of the SubSeries listed below.
- GSE210345 The 3D architecture of gene regulation in the distal convoluted tubule (RNA-Seq) August 2, 2026Contributors : Lotte Tholen ; Eveline Kahlman ; Peter Krijger ; Branco Heuts ; Amin Allahyar ; Joost Martens ; Wouter de Laat ; Joost Hoenderop ; Jeroen de BaaijSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusCell-type specific gene expression patterns are essential for kidney function. This is governed by binding of po […]
- GSE303342 A unified network systems approach uncovers a core program underlying T follicular helper cell differentiation [RNA-Seq] August 2, 2026Contributors : Vinay S Mahajan ; Hamid Mattoo ; Viswanadham Vinayak ; Grace J YuenSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensWe investigated Tfh cell differentiation across multiple levels of biological organization by integrating diverse data types through interpretable network-based approaches. Our multi-scale ne […]
- GSE303341 A unified network systems approach uncovers a core program underlying T follicular helper cell differentiation [ATAC-seq] August 2, 2026Contributors : Vinay S Mahajan ; Hamid Mattoo ; Viswanadham Vinayak ; Grace J YuenSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Homo sapiensWe investigated Tfh cell differentiation across multiple levels of biological organization by integrating diverse data types through interpretable network-based approaches. Our […]
- GSE305839 Polystyrene microplastics disrupt ovarian development via cytoskeletal remodeling and epigenetic reprogramming particularly in granulosa cells August 2, 2026Contributor : Mengyao LiuSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusThe emerging environmental health issue posed by micro (nano) plastics (MNPs) has raised significant concerns. Accumulating evidence suggested that MNPs can bioaccumulate in gonads and impair fertility in animals, yet the underlying cellular mechan […]
- GSE303343 A unified network systems approach uncovers a core program underlying T follicular helper cell differentiation [CUT&RUN] August 2, 2026Contributors : Vinay S Mahajan ; Grace J YuenSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Homo sapiensWe investigated Tfh cell differentiation across multiple levels of biological organization by integrating diverse data types through interpretable network-based approaches. Our multi-scale network framework success […]
- GSE306389 Polystyrene microplastics disrupt ovarian development via cytoskeletal remodeling and epigenetic reprogramming particularly in granulosa cells [ATAC-seq] August 2, 2026Contributor : Mengyao LiuSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThe emerging environmental health issue posed by micro (nano) plastics (MNPs) has raised significant concerns. Accumulating evidence suggested that MNPs can bioaccumulate in gonads and impair fertility in animals, yet the underlying c […]
- GSE306390 Polystyrene microplastics disrupt ovarian development via cytoskeletal remodeling and epigenetic reprogramming particularly in granulosa cells [scRNA-seq] August 2, 2026Contributor : Mengyao LiuSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusThe emerging environmental health issue posed by micro (nano) plastics (MNPs) has raised significant concerns. Accumulating evidence suggested that MNPs can bioaccumulate in gonads and impair fertility in animals, yet the underlying cellular mechan […]
- GSE309314 Lecithin-cholesterol acyltransferase Lcat promotes hepatic steatosis through fatty acid metabolism reprogramming in zebrafish larvae August 2, 2026Contributors : Yuanyuan Fu ; Junjie Xu ; Lei LiSeries Type : Expression profiling by high throughput sequencingOrganism : Danio rerioLecithin-cholesterol acyltransferase (Lcat), the key enzyme in reverse cholesterol transport (RCT), has been traditionally recognized for its role in high-density lipoprotein (HDL) maturation and systemic cholesterol homeostasi […]
- GSE318367 Transcriptomic analysis of colchicine effects in adenine-induced chronic kidney disease August 2, 2026Contributors : Gyuri Kim ; Ga Young Heo ; Seung Hyeok HanSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusColchicine is an anti-inflammatory drug that has emerged as a therapeutic option in various inflammatory diseases, but its role in chronic kidney disease (CKD) remains unclear. This study investigates the reno-protec […]
- GSE341768 Transcriptional profiling of 3 dpf and 5 dpf WT zebrafish intestinal epithelial cells August 2, 2026Contributors : Daniel Levic ; Michel Bagnat ; Carina BlockSeries Type : Expression profiling by high throughput sequencingOrganism : Danio rerioFor this experiment, we analyzed gene expression changes and intron splicing events in the WT zebrafish intestine at two developmental stages (3 dpf and 5 dpf). To perform this analysis, we collected > 125 M paire […]