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Gene Expression Omnibus Announcements & Study Releases
Announcements of updates and changes to the Gene Expression Omnibus (GEO) databases and notifications of newly released functional genomic studies.
- GSE243234 Transcriptomic signature of in vitro heat stress challenged porcine granulosa cells October 22, 2024Contributors : Jaya Bharati ; Satish Kumar ; N H Mohan ; Vivek K GuptaSeries Type : Expression profiling by high throughput sequencingOrganism : Sus scrofaExploration of heat stress induced genes in granulosa cells is critical to characterization of candidate genes for thermal stress research in pigs. This study aimed to gain insight into the differentially […]
- GSE239343 The Therapeutic Potential of Adipose-Derived Mesenchymal Stem Cell Secretome in Osteoarthritis: A Comprehensive Study October 22, 2024Contributors : Elsa González-Cubero ; Maria L González-Fernández ; Marta Esteban-Blanco ; Saúl Pérez-Castrillo ; Esther Pérez-Fernández ; Juan Anguita ; Nicolás Navasa ; Ana M Aransay ; Vega Villar-SuárezSeries Type : Expression profiling by arrayOrganism : Homo sapiensOsteoarthritis (OA) is a degenerative joint disease characterized by cartilage degradation […]
- GSE253076 Tet3 regulates terminal cell differentiation at the metabolic level [Bisulfite-Seq] October 22, 2024Contributors : Isabel Mulet ; Carmen Grueso-Cortina ; Mireia Cortés-Cano ; Daniela Gerovska ; Guangming Wu ; Daniel Jimenez-Blasco ; Andrea Curtabbi ; Pablo Hernansanz-Agustín ; Israel Manjarrés-Raza ; José Antonio Enríquez ; Juan P Bolaños ; Marcos J Araúzo-Bravo ; Natalia TapiaSeries Type : Methylation profiling by high throughput sequencingOrganism : Mus […]
- GSE252128 Characterization of SMA Type II Skeletal Muscle from Treated Patients shows Mitochondrial Deficiency and Denervation October 22, 2024Contributors : Fiorella Grandi ; Piera Smeriglio ; Stephanie AstordSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensSpinal muscular atrophy (SMA) is a recessive, developmental disorder caused by the genetic loss or mutation of the gene SMN1 (Survival of Motor Neuron 1). SMA is characterized by neuromuscular symptoms and […]
- GSE279800 Caffeine modulates immunoproteasome activity and content in colorectal adenocarcinoma cells October 22, 2024Contributor : Alexander P RezvykhSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensProteasomes hydrolyze most intracellular proteins. Immunoproteasome is a specific form of proteasome implicated in inflammation, cancer and autoimmune diseases. Modulation of immunoproteasome activity and content is a promising direction fo […]
- GSE254276 Opposing regulation of the STING pathway in hepatic stellate cells by NBR1 and p62 determines the progression of hepatocellular carcinoma [RNAseq] October 22, 2024Contributors : Sadaaki Nishimura ; Juan F Linares ; Antoine L'Hermitte ; Angeles Duran ; Marc Ruiz-Martinez ; Tania Cid-Diaz ; Yotaro Kudo ; Maria T Diaz-Meco ; Jorge Moscat ; Anxo Martinez-Ordoñez ; Antonio Marzio ; Mathias Heikenwalder ; Lewis R RobertsSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusHepatocellula […]
- GSE269079 Tyrp1 is the mendelian determinant of the Axolotl (Ambystoma mexicanum) copper mutant October 22, 2024Contributors : Raissa F Cecil ; Lloyd Strohl ; Maddie K Thomas ; James L Schwartz ; Nataliya Timoshevskaya ; Jeramiah J Smith ; S Randal VossSeries Type : Expression profiling by high throughput sequencingOrganism : Ambystoma mexicanumSeveral dozen Mendelian mutants have been discovered in axolotl (Ambystoma mexicanum) populations, including several that aff […]
- GSE186478 RNA Sequencing of C. elegans control and mutant worms after 24 hour P. aeruginosa infection October 22, 2024Contributors : Supender Kaur ; Alejandro AballaySeries Type : Expression profiling by high throughput sequencingOrganism : Caenorhabditis elegansPurpose: After infection there was dendrite degeneration in the mutant animals . To decipher the mechanism responsible and the changes in the gene expression of mutant wormsMethods: Control and mutant worms were exp […]
- GSE277621 AgRP neurons shape the sperm small RNA payload October 22, 2024Contributors : Iasim Tahiri ; Sergio R Llana ; Francisco Díaz-Castro ; Marc Claret ; Arnaud ObriSeries Type : Non-coding RNA profiling by high throughput sequencingOrganism : Mus musculusDietary habits and obesity in fathers imprint upon progeny through epigenetic signals carried by sperm RNA. By activating hypothalamic AgRP neurons in mice to mimic obesity […]
- GSE274671 Tet3 regulates terminal cell differentiation at the metabolic level October 22, 2024Contributor : Natalia TapiaSeries Type : Methylation profiling by high throughput sequencingOrganism : Mus musculusTo define TET3 function in cell differentiation, we profiled the intestinal epithelium at the single-cell level from wild-type and Tet3 knockout mice. Our works shows that, in the absence of TET3, enterocytes exhibit an aberrant differentiation […]
- GSE277905 Exploring Immune Microenvironment of Colorectal Cancer Patients after Renal Transplantation October 22, 2024Contributors : Jinghui Zhang ; Kyoko Hisano ; Yusuke Mizuuchi ; Kenoki OhuchidaSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensThe present data characterizing the colorectal cancer tumor microenvironment influenced by immunosuppressants.
- GSE279511 The influence of melanoma extracellular vesicles on benign melanocytes, dermal fibroblasts and microvascular endothelial cells (part1) October 22, 2024Contributors : Xiaochen Liu ; Ralf Janknecht ; Sepideh N Asadbeigi ; Lisa Perry ; Adul-Rafeh Naqash ; Wei-Qun Ding ; Jeffrey D McBrideSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensThis study investigates the role of PRAME (Preferentially Expressed Antigen in Melanoma), a cancer-testis antigen, in melanoma progression, […]
- GSE279730 Gene expression analysis of prostate cancer cells resistant to CDK7 inhibitors October 22, 2024Contributors : Simak Ali ; Laki Buluwela ; Chun-Fui LaiSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensCDK7 has emerged as a cancer target because of its pivotal roles in cell cycle progression and transcription. Several small molecule CDK7 inhibitors (CDK7i) are now in clinical evaluation. Identifying patients most lik […]
- GSE229246 DNA methylation constrains nucleosome retention in sperm and H3K4 methylation deposition in early mouse embryos October 22, 2024Series Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencing ; Methylation profiling by high throughput sequencingOrganism : Mus musculusThis SuperSeries is composed of the SubSeries listed below.
- GSE265908 ZEB2 drives intra-tumor heterogeneity and skin squamous cell carcinoma formation with distinct EMP transition states. October 22, 2024Contributors : Jeroen Verstappe ; Nicolas Skrypek ; Jordy De Coninck ; Steven Goossens ; Niels Vandamme ; Geert Berx ; Bram De Craene ; Bieke SoenSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusPoor prognosis in cutaneous squamous cell carcinoma (cSCC) stems from poor differentiation, invasion and metastasis, all of whi […]